Class: Mapping
Represents an individual mapping between a pair of entities
URI: owl:Axiom
classDiagram
class Mapping
Mapping : author_id
Mapping : author_label
Mapping : comment
Mapping : confidence
Mapping : creator_id
Mapping : creator_label
Mapping : curation_rule
Mapping : curation_rule_text
Mapping : license
Mapping : mapping_cardinality
Mapping : mapping_date
Mapping : mapping_justification
Mapping : mapping_provider
Mapping : mapping_source
Mapping : mapping_tool
Mapping : mapping_tool_version
Mapping : match_string
Mapping : object_category
Mapping : object_id
Mapping : object_label
Mapping : object_match_field
Mapping : object_preprocessing
Mapping : object_source
Mapping : object_source_version
Mapping : object_type
Mapping : other
Mapping : predicate_id
Mapping : predicate_label
Mapping : predicate_modifier
Mapping : reviewer_id
Mapping : reviewer_label
Mapping : see_also
Mapping : semantic_similarity_measure
Mapping : semantic_similarity_score
Mapping : subject_category
Mapping : subject_id
Mapping : subject_label
Mapping : subject_match_field
Mapping : subject_preprocessing
Mapping : subject_source
Mapping : subject_source_version
Mapping : subject_type
Slots
Name | Range | Cardinality | Description | Info |
---|---|---|---|---|
subject_id | EntityReference | 1..1 | The ID of the subject of the mapping. | . |
subject_label | xsd:string | 0..1 recommended | The label of subject of the mapping | . |
subject_category | xsd:string | 0..1 | The conceptual category to which the subject belongs to. This can be a string denoting the category or a term from a controlled vocabulary. This slot is deliberately underspecified. Conceptual categories can range from those that are found in general upper ontologies such as BFO (e.g. process, temporal region, etc) to those that serve as upper ontologies in specific domains, such as COB or BioLink (e.g. gene, disease, chemical entity). The purpose of this optional field is documentation for human reviewers - when a category is known and documented clearly, the cost of interpreting and evaluating the mapping decreases. | . |
predicate_id | EntityReference | 1..1 | The ID of the predicate or relation that relates the subject and object of this match. | . |
predicate_label | xsd:string | 0..1 | The label of the predicate/relation of the mapping | . |
predicate_modifier | PredicateModifierEnum | 0..1 | A modifier for negating the prediate. See https://github.com/mapping-commons/sssom/issues/40 for discussion | . |
object_id | EntityReference | 1..1 | The ID of the object of the mapping. | . |
object_label | xsd:string | 0..1 recommended | The label of object of the mapping | . |
object_category | xsd:string | 0..1 | The conceptual category to which the subject belongs to. This can be a string denoting the category or a term from a controlled vocabulary. This slot is deliberately underspecified. Conceptual categories can range from those that are found in general upper ontologies such as BFO (e.g. process, temporal region, etc) to those that serve as upper ontologies in specific domains, such as COB or BioLink (e.g. gene, disease, chemical entity). The purpose of this optional field is documentation for human reviewers - when a category is known and documented clearly, the cost of interpreting and evaluating the mapping decreases. | . |
mapping_justification | EntityReference | 1..1 | A mapping justification is an action (or the written representation of that action) of showing a mapping to be right or reasonable. | . |
author_id | EntityReference | 0..* | Identifies the persons or groups responsible for asserting the mappings. Recommended to be a (pipe-separated) list of ORCIDs or otherwise identifying URLs, but any identifying string (such as name and affiliation) is permissible. | . |
author_label | xsd:string | 0..* | A string identifying the author of this mapping. In the spirit of provenance, consider to use author_id instead. | . |
reviewer_id | EntityReference | 0..* | Identifies the persons or groups that reviewed and confirmed the mapping. Recommended to be a (pipe-separated) list of ORCIDs or otherwise identifying URLs, but any identifying string (such as name and affiliation) is permissible. | . |
reviewer_label | xsd:string | 0..* | A string identifying the reviewer of this mapping. In the spirit of provenance, consider to use reviewer_id instead. | . |
creator_id | EntityReference | 0..* | Identifies the persons or groups responsible for the creation of the mapping. The creator is the agent that put the mapping in its published form, which may be different from the author, which is a person that was actively involved in the assertion of the mapping. Recommended to be a (pipe-separated) list of ORCIDs or otherwise identifying URLs, but any identifying string (such as name and affiliation) is permissible. | . |
creator_label | xsd:string | 0..* | A string identifying the creator of this mapping. In the spirit of provenance, consider to use creator_id instead. | . |
license | xsd:anyURI | 0..1 | A url to the license of the mapping. In absence of a license we assume no license. | . |
subject_type | EntityTypeEnum | 0..1 | The type of entity that is being mapped. | . |
subject_source | EntityReference | 0..1 | URI of ontology source for the subject. | . |
subject_source_version | xsd:string | 0..1 | Version IRI or version string of the source of the subject term. | . |
object_type | EntityTypeEnum | 0..1 | The type of entity that is being mapped. | . |
object_source | EntityReference | 0..1 | IRI of ontology source for the object. Version IRI preferred. | . |
object_source_version | xsd:string | 0..1 | Version IRI or version string of the source of the object term. | . |
mapping_provider | xsd:anyURI | 0..1 | URL pointing to the source that provided the mapping, for example an ontology that already contains the mappings, or a database from which it was derived. | . |
mapping_source | EntityReference | 0..1 | The mapping set this mapping was originally defined in. mapping_source is used for example when merging multiple mapping sets or deriving one mapping set from another. | . |
mapping_cardinality | MappingCardinalityEnum | 0..1 | A string indicating whether this mapping is from a 1:1 (the subject_id maps to a single object_id), 1:n (the subject maps to more than one object_id), n:1, 1:0, 0:1 or n:n group. Note that this is a convenience field that should be derivable from the mapping set. | . |
mapping_tool | xsd:string | 0..1 | A reference to the tool or algorithm that was used to generate the mapping. Should be a URL pointing to more info about it, but can be free text. | . |
mapping_tool_version | xsd:string | 0..1 | Version string that denotes the version of the mapping tool used. | . |
mapping_date | xsd:date | 0..1 | The date the mapping was asserted. This is different from the date the mapping was published or compiled in a SSSOM file. | . |
confidence | xsd:double | 0..1 | A score between 0 and 1 to denote the confidence or probability that the match is correct, where 1 denotes total confidence. | . |
curation_rule | EntityReference | 0..* | A curation rule is a (potentially) complex condition executed by an agent that led to the establishment of a mapping. Curation rules often involve complex domain-specific considerations, which are hard to capture in an automated fashion. The curation rule is captured as a resource rather than a string, which enables higher levels of transparency and sharing across mapping sets. The URI representation of the curation rule is expected to be a resolvable identifier which provides details about the nature of the curation rule. | . |
curation_rule_text | xsd:string | 0..* | A curation rule is a (potentially) complex condition executed by an agent that led to the establishment of a mapping. Curation rules often involve complex domain-specific considerations, which are hard to capture in an automated fashion. The curation rule should be captured as a resource (entity reference) rather than a string (see curation_rule element), which enables higher levels of transparency and sharing across mapping sets. The textual representation of curation rule is intended to be used in cases where (1) the creation of a resource is not practical from the perspective of the mapping_provider and (2) as an additional piece of metadata to augment the curation_rule element with a human readable text. | . |
subject_match_field | EntityReference | 0..* | A tuple of fields (term annotations on the subject) that was used for the match. | . |
object_match_field | EntityReference | 0..* | A tuple of fields (term annotations on the object) that was used for the match. | . |
match_string | xsd:string | 0..* | Strings that are shared by subj/obj. It is recommended to indicate the fields for the match using the object and subject_match_field slots. | . |
subject_preprocessing | EntityReference | 0..* | Method of preprocessing applied to the fields of the subject. If different preprocessing steps were performed on different fields, it is recommended to store the match in separate rows. | . |
object_preprocessing | EntityReference | 0..* | Method of preprocessing applied to the fields of the object. If different preprocessing steps were performed on different fields, it is recommended to store the match in separate rows. | . |
semantic_similarity_score | xsd:double | 0..1 | A score between 0 and 1 to denote the semantic similarity, where 1 denotes equivalence. | . |
semantic_similarity_measure | xsd:string | 0..1 | The measure used for computing the the semantic similarity score. To make processing this field as unambiguous as possible, we recommend using wikidata identifiers, but wikipedia pages could also be acceptable. | . |
see_also | xsd:string | 0..* | A URL specific for the mapping instance. E.g. for kboom we have a per-mapping image that shows surrounding axioms that drive probability. Could also be a github issue URL that discussed a complicated alignment | . |
other | xsd:string | 0..1 | Pipe separated list of key value pairs for properties not part of the SSSOM spec. Can be used to encode additional provenance data. | . |
comment | xsd:string | 0..1 | Free text field containing either curator notes or text generated by tool providing additional informative information. | . |
Usages
used by | used in | type | used |
---|---|---|---|
MappingSet | mappings | range | mapping |
Identifier and Mapping Information
Schema Source
- from schema: https://w3id.org/sssom/schema/
Mappings
Mapping Type | Mapped Value |
---|---|
self | ['owl:Axiom'] |
native | ['sssom:Mapping'] |
LinkML Specification
Direct
name: mapping
description: Represents an individual mapping between a pair of entities
from_schema: https://w3id.org/sssom/schema/
slots:
- subject_id
- subject_label
- subject_category
- predicate_id
- predicate_label
- predicate_modifier
- object_id
- object_label
- object_category
- mapping_justification
- author_id
- author_label
- reviewer_id
- reviewer_label
- creator_id
- creator_label
- license
- subject_type
- subject_source
- subject_source_version
- object_type
- object_source
- object_source_version
- mapping_provider
- mapping_source
- mapping_cardinality
- mapping_tool
- mapping_tool_version
- mapping_date
- confidence
- curation_rule
- curation_rule_text
- subject_match_field
- object_match_field
- match_string
- subject_preprocessing
- object_preprocessing
- semantic_similarity_score
- semantic_similarity_measure
- see_also
- other
- comment
class_uri: owl:Axiom
Induced
name: mapping
description: Represents an individual mapping between a pair of entities
from_schema: https://w3id.org/sssom/schema/
attributes:
subject_id:
name: subject_id
description: The ID of the subject of the mapping.
examples:
- value: HP:0009894
description: The CURIE denoting the Human Phenotype Ontology concept of 'Thickened
ears'
from_schema: https://w3id.org/sssom/schema/
mappings:
- owl:annotatedSource
slot_uri: owl:annotatedSource
alias: subject_id
owner: mapping
range: EntityReference
required: true
subject_label:
name: subject_label
description: The label of subject of the mapping
examples:
- value: Thickened ears
from_schema: https://w3id.org/sssom/schema/
alias: subject_label
owner: mapping
range: string
recommended: true
subject_category:
name: subject_category
description: The conceptual category to which the subject belongs to. This can
be a string denoting the category or a term from a controlled vocabulary. This
slot is deliberately underspecified. Conceptual categories can range from those
that are found in general upper ontologies such as BFO (e.g. process, temporal
region, etc) to those that serve as upper ontologies in specific domains, such
as COB or BioLink (e.g. gene, disease, chemical entity). The purpose of this
optional field is documentation for human reviewers - when a category is known
and documented clearly, the cost of interpreting and evaluating the mapping
decreases.
examples:
- value: UBERON:0001062
description: (The CURIE of the Uberon term for "anatomical entity".)
- value: anatomical entity
description: (A string, rather than ID, describing the "anatomical entity" category.
This is possible, but less preferred than using an ID.)
- value: biolink:Gene
description: (The CURIE of the biolink class for genes.)
from_schema: https://w3id.org/sssom/schema/
see_also:
- https://github.com/mapping-commons/sssom/issues/13
- https://github.com/mapping-commons/sssom/issues/256
alias: subject_category
owner: mapping
range: string
predicate_id:
name: predicate_id
description: The ID of the predicate or relation that relates the subject and
object of this match.
examples:
- value: skos:exactMatch
from_schema: https://w3id.org/sssom/schema/
mappings:
- owl:annotatedProperty
slot_uri: owl:annotatedProperty
alias: predicate_id
owner: mapping
range: EntityReference
required: true
predicate_label:
name: predicate_label
description: The label of the predicate/relation of the mapping
examples:
- value: owl:sameAs
description: The subject and the object are instances (owl individuals), and
the two instances are the same.
- value: owl:equivalentClass
description: The subject and the object are classes (owl class), and the two
classes are the same.
- value: owl:equivalentProperty
description: The subject and the object are properties (owl object, data, annotation
properties), and the two properties are the same.
- value: rdfs:subClassOf
description: The subject and the object are classes (owl class), and the subject
is a subclass of the object.
- value: rdfs:subPropertyOf
description: The subject and the object are properties (owl object, data, annotation
properties), and the subject is a subproperty of the object.
- value: skos:relatedMatch
description: The subject and the object are associated in some unspecified way.
- value: skos:closeMatch
description: The subject and the object are sufficiently similar that they can
be used interchangeably in some information retrieval applications.
- value: skos:exactMatch
description: The subject and the object can, with a high degree of confidence,
be used interchangeably across a wide range of information retrieval applications.
- value: skos:narrowMatch
description: 'From the SKOS primer: A triple skos:narrower (and skos:narrowMatch)
asserts that , the object of the triple, is a narrower concept than , the
subject of the triple.'
- value: skos:broadMatch
description: 'From the SKOS primer: A triple skos:broader (and skos:broadMatch)
asserts that , the object of the triple, is a broader concept than , the subject
of the triple.'
- value: oboInOwl:hasDbXref
description: Two terms are related in some way. The meaning is frequently consistent
across a single set of mappings. Note this property is often overloaded even
where the terms are of a different nature (e.g. interpro2go)
- value: rdfs:seeAlso
description: The subject and the object are associated in some unspecified way.
The object IRI often resolves to a resource on the web that provides additional
information.
from_schema: https://w3id.org/sssom/schema/
alias: predicate_label
owner: mapping
range: string
predicate_modifier:
name: predicate_modifier
description: A modifier for negating the prediate. See https://github.com/mapping-commons/sssom/issues/40
for discussion
examples:
- value: Not
description: Negates the predicate, see documentation of predicate_modifier_enum
from_schema: https://w3id.org/sssom/schema/
see_also:
- https://github.com/mapping-commons/sssom/issues/107
alias: predicate_modifier
owner: mapping
range: predicate_modifier_enum
object_id:
name: object_id
description: The ID of the object of the mapping.
examples:
- value: HP:0009894
description: The CURIE denoting the Human Phenotype Ontology concept of 'Thickened
ears'
from_schema: https://w3id.org/sssom/schema/
mappings:
- owl:annotatedTarget
slot_uri: owl:annotatedTarget
alias: object_id
owner: mapping
range: EntityReference
required: true
object_label:
name: object_label
description: The label of object of the mapping
examples:
- value: Thickened ears
from_schema: https://w3id.org/sssom/schema/
alias: object_label
owner: mapping
range: string
recommended: true
object_category:
name: object_category
description: The conceptual category to which the subject belongs to. This can
be a string denoting the category or a term from a controlled vocabulary. This
slot is deliberately underspecified. Conceptual categories can range from those
that are found in general upper ontologies such as BFO (e.g. process, temporal
region, etc) to those that serve as upper ontologies in specific domains, such
as COB or BioLink (e.g. gene, disease, chemical entity). The purpose of this
optional field is documentation for human reviewers - when a category is known
and documented clearly, the cost of interpreting and evaluating the mapping
decreases.
examples:
- value: UBERON:0001062
description: (The CURIE of the Uberon term for "anatomical entity".)
- value: anatomical entity
description: (A string, rather than ID, describing the "anatomical entity" category.
This is possible, but less preferred than using an ID.)
- value: biolink:Gene
description: (The CURIE of the biolink class for genes.)
from_schema: https://w3id.org/sssom/schema/
see_also:
- https://github.com/mapping-commons/sssom/issues/13
- https://github.com/mapping-commons/sssom/issues/256
alias: object_category
owner: mapping
range: string
mapping_justification:
name: mapping_justification
description: A mapping justification is an action (or the written representation
of that action) of showing a mapping to be right or reasonable.
examples:
- value: semapv:LexicalMatching
- value: semapv:ManualMappingCuration
from_schema: https://w3id.org/sssom/schema/
alias: mapping_justification
owner: mapping
range: EntityReference
required: true
pattern: ^semapv:(MappingReview|ManualMappingCuration|LogicalReasoning|LexicalMatching|CompositeMatching|UnspecifiedMatching|SemanticSimilarityThresholdMatching|LexicalSimilarityThresholdMatching|MappingChaining)$
any_of:
- equals_string: semapv:LexicalMatching
- equals_string: semapv:LogicalReasoning
- equals_string: semapv:CompositeMatching
- equals_string: semapv:UnspecifiedMatching
- equals_string: semapv:SemanticSimilarityThresholdMatching
- equals_string: semapv:LexicalSimilarityThresholdMatching
- equals_string: semapv:MappingChaining
- equals_string: semapv:MappingReview
- equals_string: semapv:ManualMappingCuration
author_id:
name: author_id
description: Identifies the persons or groups responsible for asserting the mappings.
Recommended to be a (pipe-separated) list of ORCIDs or otherwise identifying
URLs, but any identifying string (such as name and affiliation) is permissible.
from_schema: https://w3id.org/sssom/schema/
slot_uri: pav:authoredBy
multivalued: true
alias: author_id
owner: mapping
range: EntityReference
author_label:
name: author_label
description: A string identifying the author of this mapping. In the spirit of
provenance, consider to use author_id instead.
from_schema: https://w3id.org/sssom/schema/
multivalued: true
alias: author_label
owner: mapping
range: string
reviewer_id:
name: reviewer_id
description: Identifies the persons or groups that reviewed and confirmed the
mapping. Recommended to be a (pipe-separated) list of ORCIDs or otherwise identifying
URLs, but any identifying string (such as name and affiliation) is permissible.
from_schema: https://w3id.org/sssom/schema/
multivalued: true
alias: reviewer_id
owner: mapping
range: EntityReference
reviewer_label:
name: reviewer_label
description: A string identifying the reviewer of this mapping. In the spirit
of provenance, consider to use reviewer_id instead.
from_schema: https://w3id.org/sssom/schema/
multivalued: true
alias: reviewer_label
owner: mapping
range: string
creator_id:
name: creator_id
description: Identifies the persons or groups responsible for the creation of
the mapping. The creator is the agent that put the mapping in its published
form, which may be different from the author, which is a person that was actively
involved in the assertion of the mapping. Recommended to be a (pipe-separated)
list of ORCIDs or otherwise identifying URLs, but any identifying string (such
as name and affiliation) is permissible.
from_schema: https://w3id.org/sssom/schema/
slot_uri: dc:creator
multivalued: true
alias: creator_id
owner: mapping
range: EntityReference
creator_label:
name: creator_label
description: A string identifying the creator of this mapping. In the spirit of
provenance, consider to use creator_id instead.
from_schema: https://w3id.org/sssom/schema/
multivalued: true
alias: creator_label
owner: mapping
range: string
license:
name: license
description: A url to the license of the mapping. In absence of a license we assume
no license.
from_schema: https://w3id.org/sssom/schema/
slot_uri: dcterms:license
alias: license
owner: mapping
range: uri
subject_type:
name: subject_type
description: The type of entity that is being mapped.
examples:
- value: owl:Class
from_schema: https://w3id.org/sssom/schema/
alias: subject_type
owner: mapping
range: entity_type_enum
subject_source:
name: subject_source
description: URI of ontology source for the subject.
examples:
- value: obo:mondo.owl
description: A persistent OBO CURIE pointing to the latest version of the Mondo
ontology.
- value: wikidata:Q7876491
description: A Wikidata identifier for the Uberon ontology resource.
from_schema: https://w3id.org/sssom/schema/
alias: subject_source
owner: mapping
range: EntityReference
subject_source_version:
name: subject_source_version
description: Version IRI or version string of the source of the subject term.
examples:
- value: http://purl.obolibrary.org/obo/mondo/releases/2021-01-30/mondo.owl
description: (A persistent Version IRI pointing to the Mondo version '2021-01-30')
from_schema: https://w3id.org/sssom/schema/
alias: subject_source_version
owner: mapping
range: string
object_type:
name: object_type
description: The type of entity that is being mapped.
examples:
- value: owl:Class
from_schema: https://w3id.org/sssom/schema/
alias: object_type
owner: mapping
range: entity_type_enum
object_source:
name: object_source
description: IRI of ontology source for the object. Version IRI preferred.
examples:
- value: obo:mondo.owl
description: A persistent OBO CURIE pointing to the latest version of the Mondo
ontology.
- value: wikidata:Q7876491
description: A Wikidata identifier for the Uberon ontology resource.
from_schema: https://w3id.org/sssom/schema/
alias: object_source
owner: mapping
range: EntityReference
object_source_version:
name: object_source_version
description: Version IRI or version string of the source of the object term.
examples:
- value: http://purl.obolibrary.org/obo/mondo/releases/2021-01-30/mondo.owl
description: (A persistent Version IRI pointing to the Mondo version '2021-01-30')
from_schema: https://w3id.org/sssom/schema/
alias: object_source_version
owner: mapping
range: string
mapping_provider:
name: mapping_provider
description: URL pointing to the source that provided the mapping, for example
an ontology that already contains the mappings, or a database from which it
was derived.
from_schema: https://w3id.org/sssom/schema/
alias: mapping_provider
owner: mapping
range: uri
mapping_source:
name: mapping_source
description: The mapping set this mapping was originally defined in. mapping_source
is used for example when merging multiple mapping sets or deriving one mapping
set from another.
examples:
- value: MONDO_MAPPINGS:mondo_exactmatch_ncit.sssom.tsv
from_schema: https://w3id.org/sssom/schema/
alias: mapping_source
owner: mapping
range: EntityReference
mapping_cardinality:
name: mapping_cardinality
description: A string indicating whether this mapping is from a 1:1 (the subject_id
maps to a single object_id), 1:n (the subject maps to more than one object_id),
n:1, 1:0, 0:1 or n:n group. Note that this is a convenience field that should
be derivable from the mapping set.
from_schema: https://w3id.org/sssom/schema/
alias: mapping_cardinality
owner: mapping
range: mapping_cardinality_enum
mapping_tool:
name: mapping_tool
description: A reference to the tool or algorithm that was used to generate the
mapping. Should be a URL pointing to more info about it, but can be free text.
examples:
- value: https://github.com/AgreementMakerLight/AML-Project
from_schema: https://w3id.org/sssom/schema/
alias: mapping_tool
owner: mapping
range: string
mapping_tool_version:
name: mapping_tool_version
description: Version string that denotes the version of the mapping tool used.
examples:
- value: v3.2
from_schema: https://w3id.org/sssom/schema/
alias: mapping_tool_version
owner: mapping
range: string
mapping_date:
name: mapping_date
description: The date the mapping was asserted. This is different from the date
the mapping was published or compiled in a SSSOM file.
from_schema: https://w3id.org/sssom/schema/
slot_uri: pav:authoredOn
alias: mapping_date
owner: mapping
range: date
confidence:
name: confidence
description: A score between 0 and 1 to denote the confidence or probability that
the match is correct, where 1 denotes total confidence.
from_schema: https://w3id.org/sssom/schema/
alias: confidence
owner: mapping
range: double
curation_rule:
name: curation_rule
description: A curation rule is a (potentially) complex condition executed by
an agent that led to the establishment of a mapping. Curation rules often involve
complex domain-specific considerations, which are hard to capture in an automated
fashion. The curation rule is captured as a resource rather than a string, which
enables higher levels of transparency and sharing across mapping sets. The URI
representation of the curation rule is expected to be a resolvable identifier
which provides details about the nature of the curation rule.
from_schema: https://w3id.org/sssom/schema/
see_also:
- https://github.com/mapping-commons/sssom/issues/166
- https://github.com/mapping-commons/sssom/pull/258
- https://github.com/mapping-commons/sssom/blob/master/examples/schema/curation_rule.sssom.tsv
multivalued: true
alias: curation_rule
owner: mapping
range: EntityReference
curation_rule_text:
name: curation_rule_text
description: A curation rule is a (potentially) complex condition executed by
an agent that led to the establishment of a mapping. Curation rules often involve
complex domain-specific considerations, which are hard to capture in an automated
fashion. The curation rule should be captured as a resource (entity reference)
rather than a string (see curation_rule element), which enables higher levels
of transparency and sharing across mapping sets. The textual representation
of curation rule is intended to be used in cases where (1) the creation of a
resource is not practical from the perspective of the mapping_provider and (2)
as an additional piece of metadata to augment the curation_rule element with
a human readable text.
from_schema: https://w3id.org/sssom/schema/
see_also:
- https://github.com/mapping-commons/sssom/issues/166
- https://github.com/mapping-commons/sssom/pull/258
- https://github.com/mapping-commons/sssom/blob/master/examples/schema/curation_rule_text.sssom.tsv
multivalued: true
alias: curation_rule_text
owner: mapping
range: string
subject_match_field:
name: subject_match_field
description: A tuple of fields (term annotations on the subject) that was used
for the match.
from_schema: https://w3id.org/sssom/schema/
multivalued: true
alias: subject_match_field
owner: mapping
range: EntityReference
object_match_field:
name: object_match_field
description: A tuple of fields (term annotations on the object) that was used
for the match.
from_schema: https://w3id.org/sssom/schema/
multivalued: true
alias: object_match_field
owner: mapping
range: EntityReference
match_string:
name: match_string
description: Strings that are shared by subj/obj. It is recommended to indicate
the fields for the match using the object and subject_match_field slots.
from_schema: https://w3id.org/sssom/schema/
multivalued: true
alias: match_string
owner: mapping
range: string
subject_preprocessing:
name: subject_preprocessing
description: Method of preprocessing applied to the fields of the subject. If
different preprocessing steps were performed on different fields, it is recommended
to store the match in separate rows.
examples:
- value: semapv:Stemming
- value: semapv:StopWordRemoval
from_schema: https://w3id.org/sssom/schema/
multivalued: true
alias: subject_preprocessing
owner: mapping
range: EntityReference
object_preprocessing:
name: object_preprocessing
description: Method of preprocessing applied to the fields of the object. If different
preprocessing steps were performed on different fields, it is recommended to
store the match in separate rows.
examples:
- value: semapv:Stemming
- value: semapv:StopWordRemoval
from_schema: https://w3id.org/sssom/schema/
multivalued: true
alias: object_preprocessing
owner: mapping
range: EntityReference
semantic_similarity_score:
name: semantic_similarity_score
description: A score between 0 and 1 to denote the semantic similarity, where
1 denotes equivalence.
from_schema: https://w3id.org/sssom/schema/
alias: semantic_similarity_score
owner: mapping
range: double
semantic_similarity_measure:
name: semantic_similarity_measure
description: The measure used for computing the the semantic similarity score.
To make processing this field as unambiguous as possible, we recommend using
wikidata identifiers, but wikipedia pages could also be acceptable.
examples:
- value: https://www.wikidata.org/wiki/Q865360
description: (the Wikidata identifier for the Jaccard index measure).
from_schema: https://w3id.org/sssom/schema/
alias: semantic_similarity_measure
owner: mapping
range: string
see_also:
name: see_also
description: A URL specific for the mapping instance. E.g. for kboom we have a
per-mapping image that shows surrounding axioms that drive probability. Could
also be a github issue URL that discussed a complicated alignment
from_schema: https://w3id.org/sssom/schema/
slot_uri: rdfs:seeAlso
multivalued: true
alias: see_also
owner: mapping
range: string
other:
name: other
description: Pipe separated list of key value pairs for properties not part of
the SSSOM spec. Can be used to encode additional provenance data.
from_schema: https://w3id.org/sssom/schema/
alias: other
owner: mapping
range: string
comment:
name: comment
description: Free text field containing either curator notes or text generated
by tool providing additional informative information.
from_schema: https://w3id.org/sssom/schema/
slot_uri: rdfs:comment
alias: comment
owner: mapping
range: string
class_uri: owl:Axiom