Class: MappingSet

name: mapping set
description: Represents a set of mappings
from_schema: https://w3id.org/sssom/schema/
slots:
- mappings
- mapping_set_id
- mapping_set_version
- mapping_set_source
- mapping_set_title
- mapping_set_description
- creator_id
- creator_label
- license
- subject_type
- subject_source
- subject_source_version
- object_type
- object_source
- object_source_version
- mapping_provider
- mapping_tool
- mapping_date
- subject_match_field
- object_match_field
- subject_preprocessing
- object_preprocessing
- see_also
- other
- comment
slot_usage:
  license:
    name: license
    required: true

name: mapping set
description: Represents a set of mappings
from_schema: https://w3id.org/sssom/schema/
slot_usage:
  license:
    name: license
    required: true
attributes:
  mappings:
    name: mappings
    description: Contains a list of mapping objects
    from_schema: https://w3id.org/sssom/schema/
    multivalued: true
    alias: mappings
    owner: mapping set
    range: mapping
    recommended: true
    inlined_as_list: true
  mapping_set_id:
    name: mapping_set_id
    description: A globally unique identifier for the mapping set (not each individual
      mapping). Should be IRI, ideally resolvable.
    examples:
    - value: http://purl.obolibrary.org/obo/mondo/mappings/mondo_exactmatch_ncit.sssom.tsv
      description: (A persistent URI pointing to the latest version of the Mondo -
        NCIT mapping in the Mondo namespace.)
    from_schema: https://w3id.org/sssom/schema/
    alias: mapping_set_id
    owner: mapping set
    range: uri
    required: true
  mapping_set_version:
    name: mapping_set_version
    description: A version string for the mapping.
    examples:
    - value: '2020-01-01'
      description: (A date-based version that indicates that the mapping was published
        on the 1st January in 2021.)
    - value: 1.2.1
      description: (A semantic version tag that indicates that this is the 1st major,
        2nd minor version, patch 1 (https://semver.org/).)
    from_schema: https://w3id.org/sssom/schema/
    slot_uri: owl:versionInfo
    alias: mapping_set_version
    owner: mapping set
    range: string
  mapping_set_source:
    name: mapping_set_source
    description: A mapping set or set of mapping set that was used to derive the mapping
      set.
    examples:
    - value: http://purl.obolibrary.org/obo/mondo/mappings/2022-05-20/mondo_exactmatch_ncit.sssom.tsv
      description: A persistent, ideally versioned, link to the mapping set from which
        the current mapping set is derived.
    from_schema: https://w3id.org/sssom/schema/
    slot_uri: prov:wasDerivedFrom
    multivalued: true
    alias: mapping_set_source
    owner: mapping set
    range: uri
  mapping_set_title:
    name: mapping_set_title
    description: The display name of a mapping set.
    examples:
    - value: The Mondo-OMIM mappings by Monarch Initiative.
    from_schema: https://w3id.org/sssom/schema/
    slot_uri: dc:title
    alias: mapping_set_title
    owner: mapping set
    range: string
  mapping_set_description:
    name: mapping_set_description
    description: A description of the mapping set.
    examples:
    - value: This mapping set was produced to integrate human and mouse phenotype
        data at the IMPC. It is primarily used for making mouse phenotypes searchable
        by human synonyms at https://mousephenotype.org/.
    from_schema: https://w3id.org/sssom/schema/
    slot_uri: dc:description
    alias: mapping_set_description
    owner: mapping set
    range: string
  creator_id:
    name: creator_id
    description: Identifies the persons or groups responsible for the creation of
      the mapping. The creator is the agent that put the mapping in its published
      form, which may be different from the author, which is a person that was actively
      involved in the assertion of the mapping. Recommended to be a (pipe-separated)
      list of ORCIDs or otherwise identifying URLs, but any identifying string (such
      as name and affiliation) is permissible.
    from_schema: https://w3id.org/sssom/schema/
    slot_uri: dc:creator
    multivalued: true
    alias: creator_id
    owner: mapping set
    range: EntityReference
  creator_label:
    name: creator_label
    description: A string identifying the creator of this mapping. In the spirit of
      provenance, consider to use creator_id instead.
    from_schema: https://w3id.org/sssom/schema/
    multivalued: true
    alias: creator_label
    owner: mapping set
    range: string
  license:
    name: license
    description: A url to the license of the mapping. In absence of a license we assume
      no license.
    from_schema: https://w3id.org/sssom/schema/
    slot_uri: dcterms:license
    alias: license
    owner: mapping set
    range: uri
    required: true
  subject_type:
    name: subject_type
    description: The type of entity that is being mapped.
    examples:
    - value: owl:Class
    from_schema: https://w3id.org/sssom/schema/
    alias: subject_type
    owner: mapping set
    range: entity_type_enum
  subject_source:
    name: subject_source
    description: URI of ontology source for the subject.
    examples:
    - value: obo:mondo.owl
      description: A persistent OBO CURIE pointing to the latest version of the Mondo
        ontology.
    - value: wikidata:Q7876491
      description: A Wikidata identifier for the Uberon ontology resource.
    from_schema: https://w3id.org/sssom/schema/
    alias: subject_source
    owner: mapping set
    range: EntityReference
  subject_source_version:
    name: subject_source_version
    description: Version IRI or version string of the source of the subject term.
    examples:
    - value: http://purl.obolibrary.org/obo/mondo/releases/2021-01-30/mondo.owl
      description: (A persistent Version IRI pointing to the Mondo version '2021-01-30')
    from_schema: https://w3id.org/sssom/schema/
    alias: subject_source_version
    owner: mapping set
    range: string
  object_type:
    name: object_type
    description: The type of entity that is being mapped.
    examples:
    - value: owl:Class
    from_schema: https://w3id.org/sssom/schema/
    alias: object_type
    owner: mapping set
    range: entity_type_enum
  object_source:
    name: object_source
    description: IRI of ontology source for the object. Version IRI preferred.
    examples:
    - value: obo:mondo.owl
      description: A persistent OBO CURIE pointing to the latest version of the Mondo
        ontology.
    - value: wikidata:Q7876491
      description: A Wikidata identifier for the Uberon ontology resource.
    from_schema: https://w3id.org/sssom/schema/
    alias: object_source
    owner: mapping set
    range: EntityReference
  object_source_version:
    name: object_source_version
    description: Version IRI or version string of the source of the object term.
    examples:
    - value: http://purl.obolibrary.org/obo/mondo/releases/2021-01-30/mondo.owl
      description: (A persistent Version IRI pointing to the Mondo version '2021-01-30')
    from_schema: https://w3id.org/sssom/schema/
    alias: object_source_version
    owner: mapping set
    range: string
  mapping_provider:
    name: mapping_provider
    description: URL pointing to the source that provided the mapping, for example
      an ontology that already contains the mappings, or a database from which it
      was derived.
    from_schema: https://w3id.org/sssom/schema/
    alias: mapping_provider
    owner: mapping set
    range: uri
  mapping_tool:
    name: mapping_tool
    description: A reference to the tool or algorithm that was used to generate the
      mapping. Should be a URL pointing to more info about it, but can be free text.
    examples:
    - value: https://github.com/AgreementMakerLight/AML-Project
    from_schema: https://w3id.org/sssom/schema/
    alias: mapping_tool
    owner: mapping set
    range: string
  mapping_date:
    name: mapping_date
    description: The date the mapping was asserted. This is different from the date
      the mapping was published or compiled in a SSSOM file.
    from_schema: https://w3id.org/sssom/schema/
    slot_uri: pav:authoredOn
    alias: mapping_date
    owner: mapping set
    range: date
  subject_match_field:
    name: subject_match_field
    description: A tuple of fields (term annotations on the subject) that was used
      for the match.
    from_schema: https://w3id.org/sssom/schema/
    multivalued: true
    alias: subject_match_field
    owner: mapping set
    range: EntityReference
  object_match_field:
    name: object_match_field
    description: A tuple of fields (term annotations on the object) that was used
      for the match.
    from_schema: https://w3id.org/sssom/schema/
    multivalued: true
    alias: object_match_field
    owner: mapping set
    range: EntityReference
  subject_preprocessing:
    name: subject_preprocessing
    description: Method of preprocessing applied to the fields of the subject. If
      different preprocessing steps were performed on different fields, it is recommended
      to store the match in separate rows.
    examples:
    - value: semapv:Stemming
    - value: semapv:StopWordRemoval
    from_schema: https://w3id.org/sssom/schema/
    multivalued: true
    alias: subject_preprocessing
    owner: mapping set
    range: EntityReference
  object_preprocessing:
    name: object_preprocessing
    description: Method of preprocessing applied to the fields of the object. If different
      preprocessing steps were performed on different fields, it is recommended to
      store the match in separate rows.
    examples:
    - value: semapv:Stemming
    - value: semapv:StopWordRemoval
    from_schema: https://w3id.org/sssom/schema/
    multivalued: true
    alias: object_preprocessing
    owner: mapping set
    range: EntityReference
  see_also:
    name: see_also
    description: A URL specific for the mapping instance. E.g. for kboom we have a
      per-mapping image that shows surrounding axioms that drive probability. Could
      also be a github issue URL that discussed a complicated alignment
    from_schema: https://w3id.org/sssom/schema/
    slot_uri: rdfs:seeAlso
    multivalued: true
    alias: see_also
    owner: mapping set
    range: string
  other:
    name: other
    description: Pipe separated list of key value pairs for properties not part of
      the SSSOM spec. Can be used to encode additional provenance data.
    from_schema: https://w3id.org/sssom/schema/
    alias: other
    owner: mapping set
    range: string
  comment:
    name: comment
    description: Free text field containing either curator notes or text generated
      by tool providing additional informative information.
    from_schema: https://w3id.org/sssom/schema/
    slot_uri: rdfs:comment
    alias: comment
    owner: mapping set
    range: string