2nd Mapping Commons Workshop on Simple Standard for Sharing Ontology Mappings (SSSOM)
When: Sunday, 23rd April, 2:30 pm Italy (CET), 1:30 pm BST, 8:30 am EDT, 5:30 am PDT (3 hours total)
Where: co-located with Biocuration 2023. For information about the venue see https://biocuration2023.github.io/workshops.
During the workshop, we will work a lot with Slido for interactive sharing of ideas, rather than relying on open discussions. We recommend having your laptop / phone with you to be able to participate.
Recordings
https://www.youtube.com/watch?v=juMQQ01Q540&list=PLqu_J7ADQtKyX55F7RqZtaSS7TwGd3MoR&ab_channel=BiocurationConference2023
Recommended preparation
- Scroll through the documentation, in particular the paper and the basic tutorial to get a basic sense of SSSOM
- Skim through, or even watch, the SSSOM CCB Seminar recording
- Scroll through the slide decks describing the problems we will be adressing (note, they are all works in progress):
- Complex Mappings: Examples from OMOP2OBO (Tiffany Callahan)
- Complex mappings - the journey towards a proposal (Nico Matentzoglu)
- Literal mappings with SSSOM (James McLaughlin)
- FAIR Impact and schema mappings (Yann Le Franc) - slides TBD
- Mapping Data Structures: Challenges and Approaches (Chris Mungall)
- Concept Set Mappings (Chris Roeder) - slides TBD
Preliminary agenda
| Time | Topic | Led by |
|---|---|---|
| 2:30pm | Welcome, introduction, SSSOM overview and introduction of the problem of "non-simple mappings" | Nico Matentzoglu |
| 2:55pm | FAIR Impact and schema mappings | Yann Le Franc |
| 3:10pm | Literal mappings with SSSOM | James McLaughlin |
| 3:20pm | Literal Mappings - Discussion | |
| 3:30pm | Concept Set Mappings | Chris Roeder |
| 3:45pm | Concept Set Mappings - discussion | |
| 3:55pm | Break | |
| 4:05pm | Complex Mappings: Examples from OMOP2OBO | Tiffany Callahan |
| 4:20pm | Complex mappings - the journey towards a proposal | Nico Matentzoglu |
| 4:35pm | Complex Mappings - discussion | |
| 4:50pm | Mapping Data Structures: Challenges and Approaches | Chris Mungall |
| 5:05pm | Schema Mappings - discussion | |
| 5:20pm | Summary and closing remarks | Nico Matentzoglu |
Organisers
- Nicolas Matentzoglu
- Yann Le Franc
- Tiffany Callahan
- Chris Mungall
- Chris Roeder
- James McLaughlin
- Nomi Harris