Information Extraction from Literature

Data integration

Information Extraction from Biomedical Literature Case Study Infobox

• Author: Harry Caufield (@caufieldjh)
• Last updated: 2025-04-02
• Mapping Type:
• Status of this case study:

Information Extraction from Biomedical Literature

Domain

biomedicine

Purpose of the mapping

Data integration

Other purpose of the mapping

No response

Type of mapped resources

Names of entities described in biomedical research, including chemicals, diseases, phenotypes, and biological processes.

Links to an existing mappings

https://github.com/monarch-initiative/ontogpt/blob/main/src/ontogpt/engines/mapping_engine.py

Tools used for creating the mapping

OntoGPT, Ontology Access Kit

Type of mapping relations

Synonymy

Examples (samples) of different types of mapping implementations

NA